Talks, Presentations, and Outreach
Presentations
Invited Speaker: Mapping spatial omics when tissue architecture doesn’t match
Event: ISMB24
Location: Montreal, Canada
Date: July 2024
- Highlighted Advances in the development of Vesalius, including multi-modal embedding and cell mapping
Invited Speaker: Vesalius: high-resolution in silico anatomization of Spatial Transcriptomic data using Image Analysis
Event: Single Cell Network Copenhagen
Location: Copenhagen, Denmark
Date: December 2021
- Showcased the Vesalius package - a novel tool to decipher tissue anatomy from Spatial transcriptomics using image analysis
Invited Speaker: Vesalius: high-resolution in silico anatomization of Spatial Transcriptomic data using Image Analysis
Event: HeaDS Copenhagen
Location: Copenhagen, Denmark
Date: November 2021
- Showcased the Vesalius package - a novel tool to decipher tissue anatomy from Spatial transcriptomics using image analysis
Presenter: Vesalius: Image-free extraction and analysis of tissue anatomy by using image processing applied to sequencing-based Spatial Transcriptomics
Event: ISMBECCB21
Location: Online
Date: July 2021
- Showcased the Vesalius package - a novel tool to decipher tissue anatomy from Spatial transcriptomics using image analysis
Presenter: Dissecting the binding mechanisms of transcription factors to DNA using a statistical thermodynamics framework
Event: Chromatin Workshop
Location: Colchester, UK
Date: July 2019
- Presented the latest results obtained using ChIPanalyser in understanding transcription factor binding mechanisms
Presenter: Estimating Transcription Factor binding in *Drosophila with ChIPanalyser*
Event: Quantitative Methods in Gene Regulation
Location: Cambridge, UK
Date: December 2017
- Introduced analysis carried out using ChIPanalyser
Presenter: It from bit, bit from it
Event: DIANA Science Conference
Location: Uppsala, Sweden
Date: October 2013
- Introduced the issue of information VS reality in science
Posters
Poster: Exploring tissue structure across spatial omic modalities with Vesalius
Event: Single Cell Symposium
Location: San Diego, USA
Date: August 2023
- Highlighted Advances in the development of Vesalius, including multi-modal embedding and cell mapping
Poster: Exploring tissue structure across spatial omic modalities with Vesalius
Event: ISMB23
Location: Lyon, France
Date: July 2023
- Highlighted Advances in the development of Vesalius, including multi-modal embedding
Poster: Vesalius: high-resolution in silico anatomization of Spatial Transcriptomic data using Image Analysis
Event: Welcome Trust Single Cell Biology Conference
Location: Cambridge, UK
Date: June 2022
- Showcased the Vesalius package - a novel tool to decipher tissue anatomy from Spatial transcriptomics using image analysis
Poster: Vesalius: high-resolution in silico anatomization of Spatial Transcriptomic data using Image Analysis
Event: Swedish Bioinformatics Workshop
Location: Lund, Sweden
Date: October 2021
- Showcased the Vesalius package - a novel tool to decipher tissue anatomy from Spatial transcriptomics using image analysis
Poster: Vesalius: high-resolution in silico anatomization of Spatial Transcriptomic data using Image Analysis
Event: OzSingleCell
Location: Online
Date: October 2021
- Showcased the Vesalius package - a novel tool to decipher tissue anatomy from Spatial transcriptomics using image analysis
Poster: ChIPanalyser: a versatile R/Bioconductor package to model and predict binding of transcription factors to DNA
Event: ISCB/RECOMB
Location: New York, USA
Date: December 2018
- Showcased advances in analysis done using ChIPanalyser
Poster: Estimating Transcription Factor binding in *Drosophila with ChIPanalyser*
Event: EMBO Nuclear Dynamics
Location: Isle-sur-la-Sorgue, France
Date: October 2017
- Introduced analysis carried out using ChIPanalyser
Poster: ChIPanalyser – Transcription Factor binding prediction in R
Event: GATE Symposium
Location: University of Essex, UK
Date: September 2017
- Introduced ChIPanalyser - an R package implementing a statistical thermodynamic framework for transcription factor binding
Outreach
Invited Guest
Event: The Genomics Lab podcast hosted by Dr. Olivia Grant
Date: December 2021
- Introduced Spatial Transcriptomics and the development of analysis methods
Invited Guest
Event: The Genomics Lab podcast hosted by Dr. Olivia Grant
Date: August 2021
- Introduced analysis of transcription factor binding to DNA using ChIPanalyser